Using CVI 2010 you can create different Custom Configurations
But I think that if a developer creates a new Custom Configuration (debug or release, x86 or x64), he wants to distribute it to a target machine. I don't create a Custom Configuration to have it run on my developer machine!
I've already asked to NI Support, and this can't be done in an automatic way.
So I suggest a new feature in the "Edit Installer" window to specify which Configuration (Default or Custom) to include into the installer (see attachments)
Vix
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In claris non fit interpretatio
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Using LV from 7
Using LW/CVI from 6.0