Use the "Command Line" input for the entire command as you would type it at the DOS prompt, including all parameters. In this case "dir c:\". The "standard input" allows you to redirect input to the program that you are running. For example if you were running a batch file with a "pause" statement, you could input an end of line through the "standard input" to simulate pressing "Enter" on the keyboard.
You can also wire to the "Standard Output" to get the output from the program to go somewhere other than the screen.
I do not know about Win2000, but in NT, we could not use System Exec.vi to do what we needed and downloaded LVWUtil32 from the site here. This gives you some similar type of capability and more documentation on using it.
Rob