Hello letreca,
I think you would be able to use one counter (one for the actual signal you are counting) but you would still have to generate a gate signal to reference that was external to the counter module. As long as you know 1) the length of the gate signal and 2) the number of pulses that occured when the gate signal is high, you should be able to determine the frequency and it doesn't really matter where the gate signal comes from. For example, if you send in a gate signal that you know is high for 1 second and you count 10 pulses on the source signal, than you can calculate that you have measured a frequency of 10 Hz.
Take care,
E.Lee
Eric
DE For Life!