Hi Jordan,
If I look at each channel separately, they both measure between 15-20mV with a signal on (I'm measuring the voltage of photodiodes). With the signal off, I measure a voltage of 2-3mV. If the trigger pulse in not in sync with the signal then I measure 2-3mV. If you look at the front panel picture that is attached above, you can see that channel 1 (white trace) is reading a signal but channel 2 (red trace) isn't. Both channels should be reading a voltage around 20mV. If I switch the channels around so that channel 2 in created first then channel 2 will measure around 20mV and Channel 1 will measure 2mV.
I hope this makes sense. Thanks for your time.
Ben