Hello;
Noise is a difficult issue to advise about.
There are some things you can try, but the result will depend on different factors, such as, environment, lenght of cables, equipment on vicinity, etc.
Anyways, you can try to hook up a BIAS resistor in between the ch- and AIGND on your BNC device. That resistor will bleed out the common voltage current and help on noise balancing. Another thing you can try is to hook up a simple RC low pass filter at the analog input. That might help to get rid of that noise.
I'm also attaching an App Note that talks about Noise and some ways to get around it.
Hope this helps.
Filipe A.
Applications Engineer
National Instruments