Please take a look at the following document:
http://digital.ni.com/public.nsf/websearch/AD9EC11DA7E9C41486256D02005C9BEA?OpenDocument
Basically you need to give the filter on the board a few seconds for the DC signal to decay down to 0V. Then you should not see the offset with the AC coupling.
Bryan Snarr
Field Engineer
Northern California
National Instruments