Hello,
Have you tried using any of the IMAQ 1394 shipping examples? There are three examples that shipped with the 1394 drivers: Triggered Snap, Triggered Grab (with DAQ), and Triggered Grab Async (with DAQ). These examples can be found at C:\Program Files\National Instruments\LabVIEW 7.1\examples\IMAQ\IMAQ1394 examples.llb.
Try running one of those to see if the problem exists there as well. I would suggest starting with the Triggered Snap VI. If the issue does not resurface, try modifying that code to meet your needs.
Regards,
Scott R.
Applications Engineer
National Instruments
Scott Romine
Course Development Engineer
National Instruments