Hello Jason,
You can find the IMAQ Bayer Color Decode.vi and the IMAQ Create Bayer LUT.vi in the following library:
C:\Program Files\National Instruments\<LabVIEW Directory>\vi.lib\vision\driver\imaqll.llb
If your camera uses Bayer encoding and you want to use the NI Vision Assistant, you will first need to use these VIs in LabVIEW to save your image with a conventional RGB representation. You could then open the saved image in the NI Vision Assistant and proceed to process it as desired. Of course, you would only want to do this with a sample image. After prototyping your application in the NI Vision Assistant, you would then convert the script to LabVIEW code. Finally, you would alter the beginning of the LabVIEW algorithm so that you are no longer opening a previously saved file, but rather acquiring new images, converting them using the two aforementioned Bayer VIs, and then processing them with the rest of the code that you generated from the NI Vision Assistant.
Best Regards,
Travis M.