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however the output plooted by matlab plot command has different amplitudes than the labview graph.
There are millions of ways things can be different, so you need to be a little more specific. Is it just a scaling issue? How different are they? What are the offset and multiplier settings for the y-axis of the graph?
You use the terms "chart" and "graph" interchangeably but in LabVIEW they mean very different things. So what is it?