I have an intensity graph and I want to mark a specific region which is dark and then change the z-value(autoscale) so I can see what's in this region, of course the rest of the intensity graph will be very bright but it's not a problem. How do I do that?
Easiest method is to change the z scale, unselect autocscale z and rescale the max and min z to the max and minimum region of interest. This can be easily automated, by using the roi as a subset of the input array and then get max min of the subset and feed it to the z-scale property max min.