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Not until you tell me exactly which DAQ hardware you are using (model number) and what you mean by "feeding 12MHz to LabVIEW". Are you trying to measure the frequency, pulses, edges, what?
If you looked up the PCI-6221 on the N.I. website, you'll see it has 2 counters. Hook up your card, go to MAX and setup a frequency acquisition task. MAX makes it easy to do.