From your description I would guess that the "subVI" has a loop in it that repeatedly reads the FP hardware, and the indicator is inside the loop. Right?
The thing to do is move a lot of the logic in the subVI up to the Main VI--or add the Main's added logic to the subVI, whichever is easier. In the first case, the subVI would go away, in the second, the subVI would become the Main VI.
If you're confused, post your code in V6.0 format and I'll show you what I mean.
Mike...