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Agilent/HP 53131A Frequency measurement

Hi , I have two queries/issues.

  1. I need to take multiple samples within 1ms or some time frame for the frequency measurements, Is it possible with this instrument? With my existing code I am taking samples every 1000ms (Snippet Attached).

  2. Sometimes Instrument is reporting comparatively low frequency then expected. I have crossed check with a Spectrum analyzer at the same instant and Frequency was atleast 3-4 Mhz higher then what this counter was reporting? Any workarounds to make sure Counter detects the right signal. Can we report power levels with the frequency measurements to correlate the data?accuracy.jpgaccuracy2.jpg 
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