Hi Primesh-
I couldn't find the VIs you mentioned in the zip file you posted. The "Untitled1.vi" gives me an idea of what you're trying to do though.
You will not be able to run separate VIs to output to the lines in the port because the DAQmx Base Write VI writes only in hexadecimal port format. In other words, when you try to write to two different lines you are actually writing to the port twice.
Your best bet would be to write to the port as shown in the Write Dig Port.vi example in C:\Program Files\National Instruments\LabVIEW 7.1\examples\daqmxbase\Dynamic\dio on your local hard drive.
Please let me know if you're still seeing the voltage output level problem when running this example. If so, please let me know how you're measuring the voltage and what you are sourcing when the outputs are high.
Regards,
Tom W
National Instruments