Hi CorrosionFan,
I would recommend, in addition to using the same external sample clock source, using an arm start trigger to start both counters at the same time. I would also recommend using the 80MHz timebase as you're source. This will allow you to arm both counters (essentially starting them) at the same rising edge of the 80MHz timebase. This can all be done through a DAQmx trigger property node. Here is a picture of the property node I'm referring to:

If you need any additional help or information about arm start triggers, I would highly recommend taking a look at the 6010 help file which can be downloaded
here.
I hope this helps,
Paul C.
Message Edited by Paul C. on 09-17-2007 04:06 PM