Hi Shimonek,
Depending on how your camera is set up, it may be possible for you to interlace the frames by just making changes to your camera file. However, this would require you to have two taps for your camera. Each tap would send data for one field (odd / even). If your camera only sends one tap, and the frames are sent one after another, the 'trigger/manual interlace' method you are working on may be your best bet. Are you attempting to record a single picture or video? If it is in fact possible to manually interlace the frames, I do not believe that the frame rate will be very good. Because of all the additional processing, it will be much slower, possibly 5-10 fps at best.
More information regarding the format that the camera transfers pixels could help here. However, it is possible that you will need to try your proposed software solution due to this unique camera.
Hope this helps,
Robert