You'll need first to set on some implementation details: "what" driver the stepper? A stepper controller that has for example a USB or ethernet port, etc. Then decide where FPGA comes into place: are you using it to build your state machine (your control logic) on a board that is on a client PC, or do you want to download it to a FPGA board (afraid this option is not available yet for 3rd party FPGA's in LabVIEW- use the Xilinx tools instead- unless this is your homework ...then you'll have to accomodate the ignorance of your master and commander ...wha-hahaha ). Basically think of it like a "black box" - inside there is your state machine, that takes your inputs - you pushing those buttons- and translates them to your outputs - a series of commands for your steppper motor controller.
Sorry, without more details I can't be more specific (probably I can't even with those details ... it's been a while since I've done FPGA's, and definitely I wouldn't use LabVIEW for that: yes, it's nice for show-off, but .. ..)