There are several options you can use depending on what you are trying to accomplish.
If you just need an aggregate time between measurements, you can use the Tick Count vi. This vi will give you a time in milliseconds that has no relation to actual clock time, but is very precise. You would get a tick count when you start the measurement, then another after the measurement completes. Lastly, you would get the difference of the two to get the elapsed time, in milliseconds. The millisecond timer will roll over (go back to zero) after 2^32 -1 milliseconds or about every 50 days. You should check to make sure the time did not roll over by making sure the second reading is greater than the first. Obviously, if your measurement is expected to take longer than 50 days, this wont work.
If you need this related to clock time, you can do the same thing with the "Get date time in seconds.vi" This will work no matter how long the measurement is, but is only precise to the nearest second.
The attached file shows both vi's I am referring to, as well as an example on how to use them in the manner to which I am referring. It is saved in version 8.0 so the most people can use it as I can provide.
CyberTazer
Software Systems Engineer