Jari,
If I may make a suggestion: Go ahead and write a reliable program to automate your HVAC, make sure it works, and works well and reliable. Then, grab a copy of Gary Johnson's latest book, the 3rd edition of power programming, and check out the examples of embedded LabVIEW. He and his fellow author, Richard Jennings have successfully written LabVIEW for a PC104! I am sure you would agree that you should have a reliable, low power, compact system if you hope to fully automate your HVAC. Trying to rely on windows for any real world automation is frightening to me. Of course, you have to have LabVIEW for linux to do this...
Anyway, give it a shot. Someone somewhere needs to pioneer practical applications of LabVIEW in embedded systems.
I already have
a copy on the way, have a copy of LabVIEW for linux, and plan to start PC104 shopping. Now all I have to do is find something to do with it.
Good luck, and most important, have fun.