I changed the colour of my blinking indicator to red instead of the default yellow colour (-> tools, options, colours). On my developement PC it works fine. But when i built an application (.EXE) the blinking colour is still yellow.
You need to put "blinkFG=XXXXXX" (no quotes) into the ini file for your .EXE (one will be automatically created the first time you run the .EXE if you don't have one) where XXXXXX equals the hex value for the color you want. You can copy it from your LabVIEW.ini file to your .EXE ini file.