Attached is a simple try at Fourier filtering that does about what the LabVIEW toolkit does in this case. Much as I would love you to spend lots of money on NI products, you probably don't need to. This is brain dead Fourier filtering that I suspect messes with the data a bit. You could get better results by subtracting the known signature of a triangle wave, but I have not had time to do that (yet). FYI, the coefficients are only the odd ones and proportional to ((-1)^((n-1)/2))/n^2.
The attached VI is LabVIEW 6.0, produced by a save from LabVIEW 6.1. I can not check it as I do not have 6.0 installed. Point the front panel path at one of your data files and run. Let me know if you have problems.