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It sounds like there might be a reference handling problem, hence why the next test only runs once you have closed LabVIEW (this releases all references from memory).
Is it possible that you could post the code for me to take a look at? Without actually seeing the code, it could be difficult to put a finger on what is causing the problem.
-Nick-
Nick C | Software Project Manager - LabVIEW Real-Time | National Instruments