Hey Jason,
From what you've said, it does seem that the problem lies with the buffer size that windows has. There isn't really anything that you can do in LabVIEW or NI-VISA to correct the issue. However, you can change the settings to the FIFO to allow more data. This
KnowledgeBase explains the process in doing so, there are several options, if you have any of the other modules mentioned, I would use that first.
Hope this helps
Can Wong