Not very clear on your intent. Could you please elaborate, provide more detail, be specific?
Is this a timer for the VI to start at, to run during? Either way, you will need to compare the current MS Timer Value with a prior value retrieved before your while loop. Be sure to put in a delay.
If this starts after the timer expires, connect the output of the while loop so that your code (subVI?) starts to execute after this timer. If this is to time how long your DAQ runs for, then just put the timer in with your DAQ.