You can use the VI Resample Waveform (continuous).vi located in your Analyze>>Waveform Conditioning palette. You can provide the VI with your waveform in chunks of any sizes, but you need to make sure there is a timestamp continuity, otherwise the resampling VI will reset (re-initialize) your process. In other words if you pass a waveform (t0, dt, Data(*))of 1000 samples with a sampling interval of dt = 1 us (sample rate = 1 MHz), your timestamp t0 should increase 1 us * 1000 samples = 1 ms from chunk to chunk.
Check out the examples (Search for examples, key-word = resampling)