Lei Dai
LabVIEW Guru is correct. The 6534 can use seperate clock speeds for the two different groups. The available rates are 20 MHz / integer. So both 10 and 2.5 MHz will work.
There are also several ways to synchronize the clocks. One would be to route the RTSI clock to the board clock, (this would basically disable the clock), then start your application, then reroute the board clock to itself to start both groups at the same time. Another way would be to just have both groups trigger of the same signal.
If it turns out you need a rate that is not a divisor of 20 MHz, I would suggest using a 6602 board to create the clock signals.
Brian