I agree with Bob,
By sampling at more than 2 kHz you are being compliant with Nyquist theorem, which means that the frequency content of your signal is being correctly acquired. That does not mean that the sine wave will look "pretty" on your indicator. For a direct visual presentation you might want to sample at more than 10x the maximum frequency content of your signal.
By sampling at 2.5 KHz all you guarantee is that you'll be able to reproduce the original signal when outputting the acquired samples (using a DAC) and passing the signal through a low-pass filter (which the analog acquisition already assumes for the input, in order to avoid aliasing)
The visual modulation effect you are seeing is caused by two things:
1) Your
sampling rate is not a multiple of your tone frequency.
2) Your tone frequency might not be exactly 1 kHz. Any deviation in frequency from 1 kHz will not only break point #1 above, but also make the modulation effect appear to vary over time.
Again, the issue is not critical because your signal is being correctly sampled, as far as signal processing theory is concerned. If you want to perform tone measurements then I suggest you use the tools included in LabVIEW for tone measurements.
This tutorial reinforces the concepts:
Bandwidth, Sample Rate, and Nyquist TheoremI hope this helps,
Alejandro