I did finally manage to get it to build yesterday. What made it work is only putting the primary Startup Vi in the 'startup VI' Box, and leaving the dynamic VI box empty.... If it works- it works!
I occasionally get the GPIB error when running my application from the wrong directory on my computer- I call some explicit & relative file paths, and if the files don't exist in the right location, then it sends this error while starting.
I don't know if there is any relation between that GPIB error and the one I was getting when trying to compile
thanks, Kevin