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Counter Encoder Plotting

I have been trying to plot an encoder position over a counter channel and receive a fairly smooth plots. When executing my plotting VI all alone this is easily achieved, once added into my application the plot seems to become very jagged almost as if samples are being skipped. The loop in the application seems to be executing at the desired speed as well as the signal being plotted. Not sure what would cause this behavior, the application isn't very large, only includes two modbus task and data acquisition indicators. There are quite a few property nodes for enabling visibility of certain indicators but these are called in their own loop separate from plotting loop. Any suggestions or tips would be helpful, thanks. 

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