All this message means is that the path the subVI was found at last time the Main VI was saved was found at a different location. If you save the Main VI, you should not get that message anymore. Also, since the VI's were originally delveloped in 6.0.2 and you are now using 7.1, all the 6.0.2 VIs have to be recompiled to the new version each time you open them.
What you should do make a copy of all your VIs as a backup, then open them in 7.1 and save them. The message should be gone.
If you are distributing these as an executable, you won't see this message because everything gets packaged into a single .exe file, so there's no searching for the subVIs.
Ed