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What data are you acquiring?...with what hardware? Are you still talking about accessing your clock count from your ISA board?
The loop in LabVIEW is a execution structure. Any icon you place in the loop will execute as if it were in a "do until" statement in text based programming.If you place the call library function in the loop you will be calling that dll once per iteration until the condition is met that stops the loop.
Multiple threads can be executed in the same loop...or...for more advanced applications in separate loops. Your dll call and your daq thread can reside in the same loop.
If you need more help please answer my above questions and let me know what your specific question is...or where you are having problems.
-Brett