Greetings,
It sounds as if you are running into a grounding issue. Are your signals grounded or floating?
In cases where both signal lines at the transducer end are floating, you'll want to establish an earth connection at the SCXI-1125 by connecting the negative input line to chassis ground in the terminal block. You can directly connect the negative terminal (CH-) to the chassis ground or connect thru a bias resistor. This eliminates noise that may be riding on the floating signal and provides a path to ground for the floating signal.
This information can be found in the SCXI-1125 User Manual on page 2-2. I've linked the manual below.
SCXI-1125
http://digital.ni.com/manuals.nsf/webAdvsearch/85C7726245BE7391862567BE0056BAFD?OpenDocument&vid=niwc&node=13
2100_US
I hope this helps. Have a great day.
Regards,
Todd D.
NI Applications Engineer