Hi.
The internal timebase of the PXI-6682 operates on TAI time, which is currently 35 seconds ahead of UTC (but this might change depending on future leap seconds).
Indeed, if you want to have your future time events to operate on UTC, you will have to manually add the TAI-UTC offset to the scheduled time. Depending on how long you want your application to be valid, you can simply hard-wire that to a constant value of 35, or you can read the "UTC Offset" property. However, there is a big caveat with this: the UTC offset information is only transmitted by the satellites every 12.5 minutes, so it can be up to 12.5 minutes after start-up before that property becomes valid. There is another property, the "UTC Offset Valid" boolean, which you can use to determine if the former is already valid.
The discontinuities caused by leap seconds on UTC are hard to deal with, which is why the PXI-6682 uses the TAI timebase.
Hope this helps.
Regards,
Alejandro