Ignacio;
I'm assuming you are interested on configuring the data transfer of your data acquisition devices to be interrupt based.
If that is the case, the data transfer performance will drop in relation to the DMA based data transfer. Furthermore, the data transfer will be system dependent, meaning that the maximum transfer rate will be determine by how fast your machine handles the interrupts.
The only limitation is the sample rate of your acquisition. In case you set the data transfer to be interrupt based, you will probably need to drop the sample rate in order the on board FIFO not to be overflowed.
Hope this helps.
Filipe A.
Applications Engineer
National Instruments