Hi Indrek,
There is an example program that ships with ni-imaq titled "scan 1408 channels.prj" (works with PCI-1409 too).The default location for this program on your hard drive is \samples\imaq\Ring\scan 1408 channels.prj
This sample demonstrates how to scan the 1408 and 1409 channels in multiple buffers using low-level functions, not the high level functions such as grab, but should enable you to get started. The video sources need to use the same synchronization signals.
If you are unable to locate this example on your hard drive then you can download it from Developer Zone,
http://zone.ni.com/devzone/explprog.nsf/6c163603265406328625682a006ed37d/f46626a8e180886f86256874007c96db?OpenDocument
I hope this example is of use,
Sam