Hello,
Performing numerical integration on the data set shown in your second graph will include the area from zero to your curve. If you want it to include only the area from your baseline to your curve, you can just subtract your baseline value from the array before performing the integration to account for the offset. Keep in mind that in LabVIEW, you can wire the array directly to a subtraction function with your baseline value as the other input - LabVIEW will take care of subtracting the baseline value from every element in your array.
Cheers,
Matt Pollock
National Instruments