This issue was corrected in 8.2.1.
Please see the fixed bug list for 8.2.1 - http://digital.ni.com/public.nsf/allkb/CAB9E23506CA6A18862572B8001066C6
40HEDDJG Fixed an issue where LabVIEW does not apply VI settings correctly in stand-alone applications.
George M
National Instruments