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blinking hangs in all controls/indicators sometimes

Blinking of every control/indicator stops in LV6.02. if i put a probe it shows true to blinking but apperently on screen nothing blinks. Please note it happens if I click a button with mouse to open next VI. If I use the function key (F11 etc) it works fine. Otherwise software is working fine. Can it be related to large application size?
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Perhaps if you add some kind of example reproducing the problem, someone can help you (i can have a look if the vi is in LV 5 version).
Good luck
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