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Unfortunately there isn't pre-developed code for Ramanujan Fourier transform. However, you can create your own with formula node following the definitions in
H. G. Gadiyar and R. Padma, Ramanujan-Fourier Series, the Wiener-Khintchine Formula and the Distribution of Prime Pairs, Physica A 269, 503- 510 (1999).
If you come across any problem using formula node, please post your code on the forum