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I think there is mistake in the NI-5771 documentation. There appears to be a mistake for Ref In CLK on the FAM. Additionally does anyone know how to setup the clip so that the ADC CLK takes a 10 MHz input on the ADC REF IN SMA port?
The FlexRIO Help has an entry for the 5771 CLIP that explains which signals are used to modify the clock distribution settings. Alternatively you could take a look at the 5771 Configure Clock example in the example finder.
After some other investigations I also found the the clock configuration help example for the 5771 which has code and descriptions for the clock setup. Apparently the user data lines determine the clock configuration.