Hello TroyR,
I can see what you are talking about and I think this is a feature! (Actually I believe it is just the way that it works). From the detailed help for the Marker Values [] property, you can see that "this property applies only to the active X-scale." The active scale that is set does not change even when a multiplier is applied to the x-axis.
I have included an example that shows the way that this works. Essentially this example makes use of a graph with a scale from 0 to 100. I have placed a marker at 50. You can see that when you multiply the scale by 2, that the marker value is also multiplied by 2. Thus the new range will be 0 to 200 with a marker at 100. I hope this makes clear how the marker works. Please post back if I have misunderstood your concern. Thanks!
Mike D.
National Instruments
Applications Engineer