Hello girish,
if i understand you correct, you want to measure the phase or time between the two inputs.
Measuring the Time Between Two Pulses On Separate Lines
In the LabVIEW Example finder use the Counter - Read Pulse Width and Frequency (Continuous).vi and select the two edge seperation tab. This is only a try, if it can work or not, because 30 nS is very small. The internal resulution of the oszillator with 80 MHz is 12,5nS.
If you want fully controll over all, i recommend to use a board with an FPGA onside.
best regards
Alexander