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Sync counter and AI modules

Hi,

I would like to read a compact DAQ chassis that has two modules. One is a counter module that reads a position from an encoder and the second module reads analog inputs.
I want to read from both modules in the same rate and have the data synchronized.
For the counter module that reads the encoder I can only select in FlexLogger the counter data rate and for the analog input module I can only select the slow or fast data rates. So I can not make them share the same data rate. Of course I can configure both the counter data rate and the fast data rate to have the same value but would that make them synchronized?
I guess what I am asking is how can I have them both share the same sample clock so they will be synchronized? 

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