Hello Bob,
I believe that the problem may be caused by closing the LabVIEW VI, which is being called by your sequence file, without first stopping that VI. If the VI is closed before it is stopped, the VI is still executing even though it may be hidden. Then the operator interface may seem to hang because it is waiting for this VI, which is now hidden, to finish executing before it can terminate the sequence file.
If stopping your VI before you close it does not solve your problem, please attach a simple example to this site which demonstrate the behavior you are seeing. I would then like to try to replicate your issue.
I hope this information is helpful for you.
Regards,
Kevin Leonard
Applications Engineer
National
Instruments