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NI Biomedical Startup Kit 3.0

by Member ZJ.Gu on ‎07-22-2010 04:04 AM

*Note*

it's official! the LabVIEW Biomedical Toolkit is released!  We are very excited about this new toolkit - it is the result of all several years of hard work by a dedicated team of biomedical enthusiasts here at NI and would not have been possible without all the support we received from you, the LabVIEW community. The tremendous success of the Biomedical Startup Kit on NI Labs gave us the confidence to continue the work on this project and bring it to a level of completeness, performance, and quality that we think will make it a standard tool for LabVIEW users involved in biomedical teaching and research.

The new LabVIEW Biomedical Toolkit combines the "executable" and "source code" versions of the previous startup kit and adds so much more. For the executable part, you still could use it for free after installation!

For download, please visit https://lumen.ni.com/nicif/us/evaltlktsigproc/content.xhtml

Introduction

biomedkit.png

biomedkit2.png

The Biomedical Startup Kit is a suite of applications for use in the biomedical field. These applications enable you to apply biomedical solutions using National Instruments software, such as LabVIEW, with National Instruments hardware, such as NI Educational Laboratory Virtual Instrumentation Suite II (NI ELVIS II) and DAQ cards. You can use these applications to perform built-in biomedical applications, such as to acquiring, preprocessing, extracting, and analyzing biosignals and biomedical images.

The current version is 3.0. This version includes an executable version and a source code version.

For more infomration ( including How-To documents and discussions ) and if you have any feedbacks or suggestion, please visit and post in .

Executable Version

Executable version contains the following applications:

  • File Format Converter
    • Converts files between different file types such as TDMS, LVM, ABF, MIT-BIH Database, MAT, HL7, ACQ, EMG, aECG and EDF.  MAT files are written by MATLAB®.
  • Biosignal Logger
    • Utilizes analog input channels from National Instruments hardware, such as NI ELVIS II or NI data acquisition (DAQ) hardware, to acquire signals.
    • Saves data in a TDMS file.
  • Online Biosignal Noise Reduction Data Logger
    • Uses adaptive filters to separate a signal, such as an ECG, from a noisy biosignal.
    • Saves data in a TDMS file.
  • ECG Feature Extractor
    • Imports ECG signals from different file types, such as TDMS, LVM, ABF, MIT-BIH Database, MAT, HL7, ACQ, EMG, aECG and EDF.  MAT files are written by MATLAB®.
    • Integrates robust extraction algorithms to detect ECG features, such as the QRS Complex, P wave, and T wave.
    • Supports user-defined algorithms. (This feature requires you to modify the source code of this startup kit.)
    • Exports ECG features to a TDMS file.
  • Heart Rate Variability (HRV) Analyzer
    • Provides a variety of analysis methods for HRV analysis including time domain, frequency domain, joint time-frequency domain, and nonlinear analysis.
    • Supports user-defined analysis methods (This feature requires you to modify the source code of this startup kit.)
    • Generates analysis report files.
  • Analog ECG Generator
    • Utilizes analog output channels from National Instruments hardware, such as NI ELVIS II or NI DAQ hardware, to generate a synthetic ECG signal from a recorded file or from synthetic models.
  • Noninvasive Blood Pressure (NIBP) Analyzer
    • Utilizes analog input channels from National Instruments hardware, such as NI ELVIS II or NI DAQ hardware, to control the NIBP device and acquire pressure signals.
    • Provides the functionality of NIBP analysis for research purposes by using the oscillometric method.
  • 3D Image Reconstructor
    • Reconstructs and visualizes 3D models from 2D 2D medical image slices (supporting BMP, JPG, PNG and DICOM files).

You could download the executable version here.

Souce Code Version

Souce code version includes all the souce codes of the above applications and a function palette for biomedical signal acquisiton, analysis and visualization.

Use the Biomedical VIs and Express VIs located on the Functions»User Libraries palette to create biomedical applications in LabVIEW. These VIs and Express VIs enable you to perform the following functions:

  • ECG and EEG simulation
  • File input, such as loading and converting biosignals from various file types
  • ECG preprocessing
  • ECG feature extraction
  • HRV analysis
  • EMG RMS, mean power frequency (MNF), and median power frequency (MDF) calculations
  • EEG bispectrum and bicoherence analysis
  • Load images from DICOM files
  • Create isosurface from 3D volume data
  • Draw isosurface for 3D picture control

Requirements

Executable version:

The computer you are using must meet the minimum system requirements to run the Biomedical Startup Kit:

  • Windows 7/Vista/XP
  • LabVIEW 8.6 Runtime Engine
  • DAQmx 8.8

Source Code Version:

The computer you are using must meet the minimum system requirements to run the Biomedical Startup Kit Source Code Version:

  • Windows 7/Vista/XP
  • LabVIEW 8.6 Full or Professional Development System or later
  • LabVIEW 8.6 Advanced Signal Processing Toolkit or later
  • LabVIEW 8.6 Digital Filter Design Toolkit or later
  • LabVIEW Adaptive Filter Toolkit 1.0 or later
  • DAQmx 8.8 or later

The computer you are using must meet the minimum system requirements to run the Biomedical Startup Kit SignalExpress example projects:

  • LabVIEW SignalExpress

Note  You can download free, 30-day evaluation versions of National Instruments software from ni.com/downloads/evaluation.htm.

Installation

Complete the following steps to install the Biomedical Startup Kit:

Note  Some virus detection programs interfere with the installer. Disable any automatic virus detection programs before you install. After installation, check your computer for viruses and enable any virus detection programs you disabled.

  1. Log on as an administrator or as a user with administrator privileges.
  2. Extract the files from the .zip file you downloaded.
  3. Run the setup.exe file.
  4. Follow the instructions that appear on the screen after launching the installer.

Thanks!

ZJ (Zhijun) Gu

National Instruments

Comments
Member subramanian.ksbvaj
Member

Excellent Biomedical kit with image reconstruction. Working it with myDAQ and trying to get the same performance

Prof. K.Subramanian

Bangalore

Member kinker
Member

Hi i tried to install biomedical_startup_toolkit but its asking for labview 8.6 to be preinstalled.I have labview 2009 on ma PC how can i install biomedical tookit in MA PC using labview 2009.

Member kinker
Member

how can i run

biomedical_startup_kit.zip in labview 7.1.is down graded version is available.

Member ZJ.Gu
Member

Hi,

For the zip file attached here, you only need to have LabVIEW 8.6 runtime engine (not the whole LabVIEW 8.6 or LabVIEW 2009). You could download here -  http://joule.ni.com/nidu/cds/view/p/id/1101/lang/en.

Next time you could also post your feedback on .

Thanks!

ZJ Gu

Member alejandromg
Member

Great! I am working in a project for the university here in Honduras. We want to recreate a basic Biosignal Process and this kit is a powerfull tool that will help us to do more easy our job...

Member cerecedo87
Member

soi nuevo en esto de las bioseñales y no se como conectar mi etapa de adquisision con el computador para obtener mi señal y analizarla con matlabquisiera saber si me podrias ayudar con eso te lo agradeceria saludos

Member rezituh
Member

Hello,

How can I get the source code?

Best Regards,

Carlos

Member ZJ.Gu
Member

Hi Carlos,

Please contact [Edit: email removed as it is no longer used for support*] to request more information

ZJ Gu

*For support please use standard customer support channels

Member hord72
Member

Hi, excellent tool for biomedical engineers and technicians. there is any tutorial or manual that you can download. Thanks

Member ZJ.Gu
Member

Hey hord72,

Go to Biomedical User Group and you could find some.

Thanks!

ZJ Gu

Member Dipti.Patil
Member

Hello,

I downloaded the Feature extractor kit but I am not getting the preprocessing options in the software i.e. QRS complex, R-R interval etc.

Plz help me out! Form where to get full version of the software. My eid is dipti.dpatil@yahoo.com

Member Dipti.Patil
Member

How to calculate ST segment! As function is under construction in this s/w! Can I get a code for it?

Member ZJ.Gu
Member

Hi,

Currently the startup kit doesn't provide ST segment analyzer functionality. If you want to get the source code version of the kit, please contact [Edit: email removed as it is no longer used for support*] to request more information

Thanks!

ZJ Gu

*For support please use standard customer support channels

Member guangjunwang
Member

Hi,

where can I find the link of startup kit source code version?

Member ZJ.Gu
Member

Hi,

If you want to get the source code version of the kit, please contact [Edit: email removed as it is no longer used for support*] to request more information

Thanks!

ZJ Gu

*For support please use standard customer support channels

Member rockerito1991
Member

Hello everyone, Im just trying to install this toolkit , im using labview 2011, but i can't , it says that labview 8.5 is needed, so i dont know what to do .... Can you help me??

Thanks for helping me !

David

Member ZJ.Gu
Member

Hi,

This is executable version. You need to install LabVIEW Runtime Engine 8.6 which you could find from ni.com.

Thanks!

ZJ Gu

Member pedrorivera
Member

hello everyone, im working with emg signals from uper limb, and i want to use online biosignal noise reduction data logger, i have a few questions:

data acquisitions are differential data acquisition??, i mean, i have to connect a reference signal and an original signal and i have to use one analog input for each one, but i have to connect it in a differential configuration or can i use RSE or NRSE configuration?

im working with ni pci 6221 so i can measure in a 0 - 0.2 volts range, i want to use this measure range to be able to measure with microvolts accuracy, but in the online biosignal noise reduction data logger i can only use +-5volts range. how i can change the voltage range?, do i need source code version?.

thanks for help

Trusted Enthusiast
Trusted Enthusiast

If you want low noise and microvolt accuracy, you need to use differential data acquisition.  Single ended results in far more noise.  Can't comment on the data logger issue, since I don't know.

Active Participant MickeyD
Active Participant

Hi Pedro,

As DFGray said it would be better to use differential if you can. To change the voltage range to a lower max min range you will need to get at the source code.

In the future we may get time to make the logger look at the device you choose and offer appropriate ranges but we have not done that yet.

please email [Edit: email removed as it is no longer used for support*] and they will get you some info about how to get that working.


Thanks,

*For support please use standard customer support channels

Member Venkateshkrish
Member

Dear  Zhijun,

                  I"m currently using labview 2011 . I dowloaded the Biomedical kit from the attachment . But i cant see any vi's from my user libraries.Please clarify me on the same.

Regards,

Mohan

Member ZJ.Gu
Member

Hi Mohan,

Please see the the above reply.

Thanks!

ZJ Gu

Member Dalila
Member

Hi Mr ZhijhnGu,

I am a new user of the NI biomedical startup kit, I have a small pb when installing it, it consists of, when I start the installation, at the step of contacting the notification server, it always tells me that there is no notification server and no tool will be installed, I don't  know what does it mean, is it a pb of licence??? because I am using a university one......please I need help.

Member ZJ.Gu
Member

Hi Dalila,

Did you install the LabVIEW 8.6 Runtime Engine? It is a prerequisite.

Thanks!

ZJ Gu

Member NDSUNate
Member

Thanks for putting together a great toolkit.  I have ECG data in a .csv format and it looks like the file format converter can import and convert to a .tdms file for further processing. The only problem is that it takes each sample as a second. Is there any way that I can add the sampling frequency in the file so it interprets the data properly?

Member wagnwei
Member

hello? I can't download this kit , can you tell me the new weblink of this kit? Thank you , please!

My email is wangku001wei@163.com

Member RYADAV
Member
  1. I have GE MARS HOLTER ECG. Do we have a tool to read the data? Please advice. Thanks
Member ZJ.Gu
Member

What's the file specification of GE MARS HOLTER?

Member kmohsin
Member

Using this kit i want to identify the normal and abnormal ECG signal.How can i do that??

Member Hanzala
Member

Its been almost 2 months that i hav sent an e-mail to [Edit: email removed as it is no longer used for support*] to get the source vode version but no response yet.Can anyone provide the link here.

Thanks.

*For support please use standard customer support channels

Member bioda
Member

heloo,

i am currently working on transmission of ECG data,and would need labview,and NI medical software.can you plz help me?.thanks in advance

Member ZJ.Gu
Member

Hi,

What's your hardware for this transmission? You could ask question in our user group - https://decibel.ni.com/content/groups/biomedical-user-group.

Thanks!

Member bioda
Member

thanks for your response.i am yet to determine the hardware to be used. The intended technology is Zigbee.Any useful information would be appreciated.Thanks

Member emmad
Member

I have labview 8.5 but the NI biomedical startup kit dos't work ? and i have labviow2011

halp me

Member mizieahmad
Member

hi, can i know which DAQ card can be use for this? is it need to be a PCI type of DAQ card or i can use USB type DAQ?

please guide me.

Thanks.

Member ZJ.Gu
Member

Both USB or PCI will be detected.

Thanks!

ZJ Gu

Member PA_UW
Member

Hi there,

I am running LV 11 and would like to somehow find a way to download the biomedical startup kit without upgrading to LV 12 and using the biomedical toolkit.  Is there anyway to find the download for the biomedical startup kit 3.0?  I am also wondering if this kit will allow me to read ECG files from a Del Mar system.

Thanks!

Jenn.

Member anandsekar
Member

Hi Mr ZhijhnGu,

I am a new user of the NI biomedical startup kit, when i install 2014BMTk after extracting i am not able to geting the biomedical application in my pallets it self but it installing as a biomedical workbench and it does not have any contact with my labview.please help me i am trying this from past two weeks.if possible kindly tell me the installaton procedure and i am using LabVIEW 2012.

Member ZJ.Gu
Member

Hi,

The Biomedical Workbench is standard alone application for acquiring, processing, visualizing biosignals. What do you need?

You could post question in https://decibel.ni.com/content/groups/biomedical-user-group

Member anandsekar
Member

i need to add the biomedical application in my LabVIEW(2012) function pallet.Please tell me howto  add the biomedical application in my LabVIEW.

Member anandsekar
Member

Hi Mr ZhijhnGu,

     Thank u for NI Biomedical group now i able to use Biomedical Application in my pallets it self.

Member anasparks777@gmail.com
Member

I have labview 2013 version installed. I am trying to do a project on ecg monitoring and HRV analysis. What version of Labview Biomedical Toolkit am i supposed to download and from where can i download it?

Member ZJ.Gu
Member

Hi,

Please directly install the Biomedical Toolkit. It is the formal product.

You could download here https://lumen.ni.com/nicif/us/evaltlktsigproc/content.xhtml

Thanks!

Member anasparks777@gmail.com
Member

Hi Mr ZhijhnGu,

Thank you for the link. Now i will be able to do by project more easily. Congragulations to the Labview's Biomedical team to come up with such a novel tool

Anu

Member yx1992
Member

how to you get the function pallets?

Member ZJ.Gu
Member

Please install the Biomedical Toolkit.

Thanks!

Member RYADAV
Member

I was playing with EDF files (EEG) and noticed that LABVIEW freezes when we try to read a large file (Biomedical Toolkit) issue. Do you know a fix?

On another note, I have a CSV file that stores time-stamped data from 12 physiological sensors (Tab-delimited) that include, ECG, EMG, SPO2, GSR, Gravity etc. It is not a universal data format. What would be easiest approach to conver this data into a universal data format like EDF?

Thanks

Member RYADAV
Member

I was wondering if we have some algorithm for SPO2 analysis using two channel data to calculate oxygen saturation. Please include it in the toolkit. I am using MASIMO algorithm which I find not that great for general application.

Thanks

Member ZJ.Gu
Member

Hi,

If you have questions, please ask in Biomedical User Group - http://www.ni.com/biomedusers. There are more people who would help. For your first question, if the file is too large, please use a while loop and set a block size for the VI so that it will load the data block by block. There are always a limitation by your PC's memory size.

Thanks!

Member Avvaru
Member

i am getting page not found when i open http://www.ni.com/download/null/1101/en/ . please tell me alternate