Hi Austin-
That is very strange behavior. It almost sounds like there may be a problem with your USB hub or drivers. Are these two ports on the same hub? Also, which error message did you see once the device was running on the second port?
You can save your DAQmx Configuration data in MAX by selecting File>Export and saving the file to your hard drive. These can them be imported back once the device is reinstalled.
Can you give me a bit more info about your computer, motherboard and USB hub if possible? I would recommend that you make sure that your USB drivers and BIOS are up to date.
Thanks again-
Tom W
National Instruments