Hello Jaxx,
I'm glad you asked that becasue the DAQ Assistant has a great feature called Code Generation that will allow you to do exactly this. Take a look at the following link to see how to generate code from the DAQ Assistant.
http://zone.ni.com/devzone/conceptd.nsf/webmain/736BA7168F48742286256D2600713527?opendocument
You will be most intereseted in generating the Configuration but you can generate the Example as well. You will now have a Configuration VI that has all of the configuration data you set up in the DAQ Assistant. You can open up the Configuration VI and change all the constants to controls and you will be able to change the configuration using the front panel controls.
E.Lee
Eric
DE For Life!