Hello,
This is a good question. The answer is that it depends. Originally all of our E Series boards only supported 5V PCI buses. Now, almost all of them support 3.3V and 5V buses. However, the manuals are not split up by revisions of the DAQ boards, so it only specifies a 5V line. The best rule of thumb is that the 5V only boards do not have ability to fit into a 3.3V bus, it should need an indentation that it does not have.
Does this answer your question? A new PCI-6036E will work with either bus.
Best regards,
Justin T.
National Instruments