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What you set as inputs / outputs of a subvi is completely up to you. In regards to VISA settings, i find it highly unlikely that you will need to change them, but you might have to if different devices require different settings.
Deside what you may need to change and set it as an input to the subvi.
You didn't post a picture, so I'm not sure what you have in your subVI. In general for VISA functions, you should have already initialized any settings that are applicable to a VISA resource. So for read, write, etc. all you will need to pass in is the VISA Resource and any parameters needed to perform you function.
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