Hello,
I cannot think of a reason why Windows 2000 would behave differently. Are you seeing that it is slower on Windows 2000, or is this a conceptual question? The CV-A acts as a GPIB instrument, so it shouldn't really interact that much with the OS. If the GPIB card installed in your computer isn't sending data as fast under 2000, this could cause slowdowns with the CV-A simply because it's not able to send out the data until it gets it from the GPIB interface bus. What exactly are you seeing?
Scott